Efficient parameterization of torsional terms for force fields

نویسندگان

  • Steven K. Burger
  • Paul W. Ayers
  • Jeremy Schofield
چکیده

A novel method is presented for fitting force-field dihedral angles using an ensemble of structures generated from an ab initio Monte Carlo simulation. Importance sampling is used to achieve an efficient algorithm using a low level of theory to minimize the system at each step with the dihedral angles constrained, followed by dihedral fitting using the single point energies at a higher level of theory. The resulting method is an order of magnitude more efficient than the traditional method of doing a constrained scan over each dihedral independently. Also as the sampling is more uniformly distributed, the full surface is approximated to a greater accuracy. The dihedral fitting is done with a nonlinear optimization method to vary the phase as well as the force constant. The utility of the method is demonstrated by fitting dihedrals of methyl L-lactate, diisopropyl fluorophosphate, isopentenyl phosphate, a leucine dipeptide, and two inhibitors of Signal Transducer and Activator of Transcription 5. The results show that the Monte Carlo scheme is more efficient than constrained scans and is particularly effective at approximating the underlying potential energy surface when the dihedral degrees are coupled.

منابع مشابه

The Design of a Next Generation Force Field: The X-POL Potential.

An electronic structure-based polarization method, called the X-POL potential, has been described for the purpose of constructing an empirical force field for modeling polypeptides. In the X-POL potential, the internal, bonded interactions are fully represented by an electronic structure theory augmented with some empirical torsional terms. Non-bonded interactions are modeled by an iterative, c...

متن کامل

Fluctuating Charge, Polarizable Dipole, and Combined Models: Parameterization from ab Initio Quantum Chemistry

We performed studies of fluctuating charge, fluctuating dipole, and combined models for substituted benzenes and concluded that dipoles are necessary to avoid errors in important cases. Force fields incorporating fluctuating dipoles for alanine, serine, and phenylalanine were developed that accurately reproduce both relative conformational energies and cooperative many-body energies as given by...

متن کامل

Parameterization of the torsional potential for calix[4]arene-substituted poly(thiophene)s

Three different strategies have been followed to develop the torsional force-field parameters of the inter-ring dihedral angles for calix[4]arene-substituted poly(thiophene)s, a family of highly sensitive ion receptors. These procedures, which are based on the rotational profiles calculated using quantum mechanical methods, differ in the complexity of the model compounds and the processing appl...

متن کامل

Finite Element Analysis and Experimental Investigation on the Conventional and Vibration Assisted Drilling

In this research, finite element analysis of the conventional drilling and vibration assisted drilling is carried out. The ABAQUS software is employed for FE analysis. The Johnson-Cook models for both plastic deformation and damage are employed for FE simulation.The results of the FE analysis are then verified with experimental results in both conventional and vibration assisted drilling on Al ...

متن کامل

Finite Element Analysis and Experimental Investigation on the Conventional and Vibration Assisted Drilling

In this research, finite element analysis of the conventional drilling and vibration assisted drilling is carried out. The ABAQUS software is employed for FE analysis. The Johnson-Cook models for both plastic deformation and damage are employed for FE simulation.The results of the FE analysis are then verified with experimental results in both conventional and vibration assisted drilling on Al ...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

متن کامل
عنوان ژورنال:
  • Journal of computational chemistry

دوره 35 19  شماره 

صفحات  -

تاریخ انتشار 2014